Human Genetics and Genomics

en Risk of Atrioventricular Septal Defects in Down syndrome: Association of MTHFR C677T and RFC1 A80G polymorphisms in Indian Bengali cohort عمومى Human Genetics پژوهشي Research <div style="text-align: justify;">Background: Etiology of Congenital heart defects (CHD), especially Atrio-Ventricular Septal Defect (AVSD) among the individuals with Down syndrome (DS) is enigmatic and may differ across the population divides owing to ethnicity and sociocultural differences. The polymorphisms of folate pathway regulators MTHFR and RFC1 as risk of AVSD among DS individuals from Indian Bengali cohort has not been explored yet. Objectives: Aim of the present study is to investigate the association of MTHFR C677T and RFC1 A80G polymorphisms with the incidence of AVSD among individuals with DS in the Indian Bengali cohort. Methods: Genotyping was done by bi-directional Sanger sequencing of DNA samples from DS with AVSD (N=479; ‘DS-AVSD’), DS without AVSD (N=540; ‘DS’), karyotypically confirmed euploid with AVSD (N=321; ‘Control-AVSD’) and euploid without AVSD (N=409; ‘Control’).  Odds ratio (OR) was calculated to infer degree of risk imposed by alleles and genotypes. Functional implications of polymorphisms were inferred using Project HOPE server. Results: RFC1 A80G polymorphisms was found to be significantly associated with DS-AVSD when compared with control (p = 0.0001; p< 0.0001), control-AVSD (p=0.0004; p< 0.0001) and DS (p< 0.0001) groups. MTHFR C677T showed significant association with DS-AVSD in comparison to control only (p=0.0004; p< 0.0001). We also found elevated risk of AVSD among DS when both the polymorphisms are present together. In-silico analyses suggest probable amino acid replacement and subsequent compromised functions of the genes that may results in AVSD. Conclusion: Our study suggests the RFC1 A80G polymorphism is a significant risk for developing AVSD among the individuals with DS from Indian Bengali population. The MTHFR C677T polymorphism increases risk when present together with RFC1 A80G polymorphism.</div> Down syndrome, Atrio-ventricular Septal Defect, MTHFR, RFC1, genetic polymorphisms. 0 0 http://humangeneticsgenomics.ir/browse.php?a_code=A-10-350-2&slc_lang=en&sid=1 Agnish Ganguly 1003194753284600352 1003194753284600352 No Department of Zoology, University of Calcutta, Kolkata, India Pinku Halder 1003194753284600353 1003194753284600353 No Department of Zoology, University of Calcutta, Kolkata, India Upamanyu Pal 1003194753284600354 1003194753284600354 No Department of Zoology, University of Calcutta, Kolkata, India Sumantra Sarkar 1003194753284600355 1003194753284600355 No Department of Pediatric Medicine, Diamond Harbour Government Medical College and Hospital, Diamond Harbour, India Supratim Datta 1003194753284600356 1003194753284600356 No Department of Pediatric Medicine, Institute of Post Graduate Medical Education and Research & SSKM Hospital, Kolkata, India Sananda Pati 1003194753284600357 1003194753284600357 No Department of Pediatric Medicine, Institute of Post Graduate Medical Education and Research & SSKM Hospital, Kolkata, India Sujay Ghosh 1003194753284600358 1003194753284600358 Yes Department of Zoology, University of Calcutta, Kolkata, India